Clinical Trials (Interventional)

1 LIFT Trial (Low-Dose Naltrexone and Pyridostigmine)

  • Principal Investigator:: David Systrom, MD

  • Institution:: Brigham and Women’s Hospital, Harvard Medical School, United States

  • Contact/URL:: https://solvecfs.org/exploring-current-me-cfs-and-long-covid-clinical-trials-on-national-clinical-trials-day/

  • Funder:: Solve ME/CFS Initiative (Ramsay Research Grant)

  • Status:: Recruiting

  • Phase:: Clinical trial (interventional)

  • Cohort:: ME/CFS patients (specific \(n\) to be confirmed)

  • Mechanism/Focus:: Tests whether low-dose naltrexone (LDN) and pyridostigmine reduce symptoms and improve quality of life. LDN targets neuroinflammation via glial cell modulation; pyridostigmine is an acetylcholinesterase inhibitor used for autonomic dysfunction.

  • Primary Outcomes:: Symptom severity; quality of life measures

  • Estimated Completion:: Not yet announced

  • Timeline:: Recruitment ongoing as of 2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 16 (supplements and nutraceuticals), Ch. 10 (cardiovascular/autonomic), Ch. 17 (lifestyle interventions)

The LIFT trial addresses two of the most widely used off-label treatments in ME/CFS clinical practice. LDN has accumulated substantial anecdotal and preliminary evidence (Chapter 16) but lacks rigorous RCT data in ME/CFS specifically. Pyridostigmine targets the preload failure mechanism identified in invasive cardiopulmonary exercise testing by Systrom’s own group (Chapter 10). A positive result could provide the first high-quality evidence base for two treatments already in widespread empirical use.

2 UAB LDN Dose-Finding Study

  • Principal Investigator:: Jarred Younger, PhD

  • Institution:: University of Alabama at Birmingham, United States

  • Contact/URL:: https://clinicaltrials.gov/study/NCT07285473

  • Registry ID:: NCT07285473

  • Funder:: Institutional

  • Status:: Recruiting (remote/decentralised, US-wide)

  • Phase:: Dose-finding study

  • Cohort:: Adults with ME/CFS (specific \(n\) TBD)

  • Mechanism/Focus:: Dose-finding study for low-dose naltrexone in ME/CFS. Distinct from the LIFT trial (which combines LDN with pyridostigmine, Section Clinical Trials (Interventional)) and the RECOVER paediatric LDN trial (Section Large-Scale Federally Funded Programmes): this study focuses on determining optimal adult LDN dosing specifically for ME/CFS. Remote design enables broad US enrolment.

  • Primary Outcomes:: Dose-response for symptom reduction; safety and tolerability

  • Estimated Completion:: Not yet announced

  • Timeline:: Recruitment ongoing as of 2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 16 (supplements—LDN), Ch. 7 (immune dysfunction—microglial hypothesis)

Younger’s laboratory has prior immunology work on LDN in ME/CFS (NCT02965768). While the LIFT trial tests LDN in combination, this study isolates LDN’s independent effect and seeks to establish the optimal dose—a fundamental gap in the current evidence base. Most clinicians prescribe 1.5–4.5 mg empirically; systematic dose-finding data could substantially improve clinical practice.

3 Low-Dose Rapamycin in ME/CFS and Long Covid

  • Principal Investigator:: Multi-site collaboration

  • Institution:: Simmaron Research Institute, Bateman Horne Center, CDC, and Mayo Clinic, United States

  • Contact/URL:: https://batemanhornecenter.org/promising-clinical-trials/

  • Funder:: Multi-institutional

  • Status:: Active

  • Phase:: Clinical trial (interventional)

  • Cohort:: ME/CFS and Long Covid patients (specific \(n\) TBD)

  • Mechanism/Focus:: Rapamycin (sirolimus) is an mTOR inhibitor with immunomodulatory and anti-inflammatory properties. Targets mTOR pathway dysregulation implicated in ME/CFS immune and metabolic abnormalities.

  • Primary Outcomes:: Symptom improvement; immune marker changes; safety and tolerability

  • Estimated Completion:: Not yet announced

  • Timeline:: Study active as of 2025–2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 7 (immune dysfunction), Ch. 6 (energy metabolism), Ch. 19 (integrative approaches)

The rapamycin trial is notable for its multi-institutional design (Simmaron, Bateman Horne, CDC, Mayo Clinic), which lends credibility and ensures phenotyping rigour. mTOR pathway dysregulation has been reported in ME/CFS (Chapter 7) and connects immune activation to metabolic dysfunction (Chapter 6). This trial directly tests a mechanistic hypothesis rather than treating symptoms empirically, making it particularly informative regardless of outcome.

4 Lumbrokinase for ME/CFS and Long Covid

  • Principal Investigator:: David Putrino, PhD

  • Institution:: Abilities Research Center, Mount Sinai Icahn School of Medicine, United States

  • Contact/URL:: https://solvecfs.org/exploring-current-me-cfs-and-long-covid-clinical-trials-on-national-clinical-trials-day/

  • Funder:: Institutional

  • Status:: Recruiting

  • Phase:: Clinical trial (interventional)

  • Cohort:: Adults with Long Covid, post-treatment Lyme disease syndrome, and ME/CFS

  • Mechanism/Focus:: Lumbrokinase is a fibrinolytic enzyme targeting microclot pathology. The microclot hypothesis proposes that persistent fibrin amyloid microclots impair microcirculation, contributing to tissue hypoxia and fatigue.

  • Primary Outcomes:: Fibrinolytic markers; symptom scores; exercise tolerance

  • Estimated Completion:: Not yet announced

  • Timeline:: Recruitment ongoing as of 2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 10 (cardiovascular dysfunction), Ch. 19 (integrative approaches)

The microclot hypothesis has generated significant interest since 2021 but lacks interventional trial data. This study directly tests whether fibrinolytic treatment improves outcomes, providing a causal test of the hypothesis. The inclusion of three post-infectious conditions (Long Covid, post-Lyme, ME/CFS) mirrors the Rosetta Stone Study’s cross-disease approach, potentially revealing whether microclot pathology is a shared mechanism.

5 Hydrogen Water for ME/CFS

  • Principal Investigator:: Fred Friedberg, PhD

  • Institution:: Stony Brook University School of Medicine, United States

  • Contact/URL:: https://solvecfs.org/exploring-current-me-cfs-and-long-covid-clinical-trials-on-national-clinical-trials-day/

  • Funder:: Solve ME/CFS Initiative

  • Status:: Recruiting

  • Phase:: Clinical trial, dosing study

  • Cohort:: ME/CFS patients (specific \(n\) TBD)

  • Mechanism/Focus:: Hydrogen-rich water as an antioxidant intervention. Molecular hydrogen (\(\text{H}_2\)) selectively scavenges hydroxyl radicals and may reduce oxidative stress and neuroinflammation.

  • Primary Outcomes:: Fatigue severity; stress markers; physical function

  • Estimated Completion:: Not yet announced

  • Timeline:: Recruitment ongoing as of 2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 6 (energy metabolism—oxidative stress), Ch. 16 (supplements and nutraceuticals)

This dosing study addresses a practical gap: even if hydrogen water has antioxidant benefits, optimal dosing for ME/CFS has not been established. The oxidative stress hypothesis in ME/CFS (Chapter 6) provides a mechanistic rationale, though the evidence base for molecular hydrogen in any chronic condition remains preliminary. Results will be most informative if they include objective oxidative stress biomarkers alongside subjective symptom measures.

6 RESTORE-ME: Oxaloacetate for ME/CFS Fatigue

  • Principal Investigator:: Alan Cash, PhD

  • Institution:: Terra Biological LLC, United States (multi-site RCT)

  • Contact/URL:: https://clinicaltrials.gov/study/NCT05273372

  • Registry ID:: NCT05273372

  • Funder:: Terra Biological LLC (industry)

  • Status:: Results published (November 2024)

  • Phase:: Phase II, randomised, double-blind, placebo-controlled

  • Cohort:: 82 ME/CFS patients (2,000mg oxaloacetate vs control daily for 3 months)

  • Mechanism/Focus:: Oxaloacetate (OAA) is a mitochondrial metabolite that supports the citric acid cycle and NAD+/NADH ratio. Targets metabolic dysfunction by supplementing a key TCA cycle intermediate.

  • Primary Outcomes:: Fatigue reduced \(>\) 25% from baseline in OAA group (\(p=0.0039\) vs control); cognitive improvement at day 60 (\(p=0.034\)); modest increase in uptime at day 30

  • Estimated Completion:: Completed

  • Timeline:: RCT completed 2024; results published November 2024 in Frontiers in Neurology; cognitive follow-up published 2025

  • Publication Medium:: Frontiers in Neurology (open access)

  • Document Relevance:: Ch. 6 (energy metabolism—TCA cycle), Ch. 16 (supplements and nutraceuticals)

RESTORE-ME is one of very few completed RCTs showing statistically significant fatigue reduction in ME/CFS. The mechanistic rationale is direct: oxaloacetate is an obligate TCA cycle intermediate, and ME/CFS metabolomic studies have consistently identified TCA cycle disruption (Chapter 6). The 25% fatigue reduction is clinically meaningful, though the modest sample size (\(n=82\)) and industry sponsorship warrant independent replication. The cognitive improvement findings strengthen the case that metabolic support can address both physical and cognitive symptoms.

7 Stellate Ganglion Block for ME/CFS

  • Principal Investigator:: Deborah Duricka, PhD; Lipeng Liu, MD

  • Institution:: Multi-site, United States

  • Contact/URL:: https://doi.org/10.1080/21641846.2025.2455876

  • Funder:: Solve ME/CFS Initiative (Ramsay Research Grant)

  • Status:: Pilot study published (February 2025); larger trials needed

  • Phase:: Prospective cohort pilot (\(n=10\))

  • Cohort:: 10 patients meeting both WHO Long Covid and IOM ME/CFS criteria

  • Mechanism/Focus:: Sequential bilateral stellate ganglion blocks (local anaesthetic injection near the cervical sympathetic chain) administered over 3 consecutive weeks. Hypothesised to “reset” sympathetic/parasympathetic balance of the autonomic nervous system, increasing regional blood flow and reducing sympathetic hyperactivation.

  • Primary Outcomes:: Significant improvements in cognition, physical and social functioning, vitality; reduced orthostatic intolerance and POTS symptoms. Cortisol levels did not change.

  • Estimated Completion:: Pilot completed; larger RCT recommended

  • Timeline:: Pilot published February 2025; larger trial planning stage

  • Publication Medium:: Fatigue: Biomedicine, Health & Behavior (2025)

  • Document Relevance:: Ch. 10 (cardiovascular/autonomic dysfunction), Ch. 8 (neurological dysfunction), Ch. 19 (integrative approaches)

The stellate ganglion block is a well-established procedure in pain medicine repurposed for autonomic dysfunction. The pilot results are notable for improvement across both autonomic (OI, POTS) and cognitive domains, suggesting a shared upstream mechanism. The “autonomic reset” hypothesis aligns with evidence of sympathetic hyperactivation in ME/CFS (Chapter 10). The very small sample (\(n=10\)) limits conclusions, but the effect sizes and the procedure’s established safety profile justify a larger sham-controlled RCT.

8 Transcutaneous Vagus Nerve Stimulation (tVNS) for Long Covid/ME/CFS

  • Principal Investigator:: Multiple investigators (several parallel studies)

  • Institution:: Multi-site (US and European studies)

  • Contact/URL:: https://clinicaltrials.gov/study/NCT06585254

  • Registry ID:: NCT06585254 (US dosing study); additional European trials ongoing

  • Funder:: Multiple (Solve ME/CFS Initiative, institutional)

  • Status:: Recruiting (multiple trials)

  • Phase:: Interventional (parameter optimisation and efficacy)

  • Cohort:: Long Covid and ME/CFS patients fulfilling CFS criteria; prior studies \(n=10\)–25 per trial

  • Mechanism/Focus:: Non-invasive auricular stimulation of the vagus nerve to activate the cholinergic anti-inflammatory pathway (CAP). Targets neuroinflammation, autonomic imbalance, and systemic inflammation. Prior pilot studies showed improvements in cognition, anxiety, depression, sleep, and autonomic scores (COMPASS-31).

  • Primary Outcomes:: Optimal stimulation parameters; health-related quality of life; fatigue severity; autonomic function

  • Estimated Completion:: Varies by trial; results expected 2026–2027

  • Timeline:: Multiple pilot studies published 2024–2025; current trials optimising parameters and assessing efficacy in larger cohorts

  • Publication Medium:: Frontiers in Neurology, PLOS ONE, and others (prior studies published open access)

  • Document Relevance:: Ch. 8 (neurological dysfunction), Ch. 10 (autonomic dysfunction), Ch. 7 (immune dysfunction—inflammation)

Vagus nerve stimulation represents a compelling intersection of neurology and immunology: the cholinergic anti-inflammatory pathway provides a mechanism through which neural stimulation can modulate systemic inflammation. The consistency of improvements across multiple small pilot studies (cognition, autonomic function, sleep) is encouraging, though no large RCT has yet been completed. The non-invasive nature, low side-effect profile, and consumer device availability (e.g., Nurosym) make tVNS a practical intervention if efficacy is confirmed. The current parameter-optimisation trials are a necessary step before definitive efficacy studies.

9 Masitinib for Severe Mast Cell Activation Syndrome

  • Principal Investigator:: Multiple investigators

  • Institution:: AB Science (sponsor), multi-site

  • Contact/URL:: https://clinicaltrials.gov/study/NCT05449444

  • Registry ID:: NCT05449444

  • Funder:: AB Science (industry)

  • Status:: Phase 2 (active)

  • Phase:: Phase 2 clinical trial

  • Cohort:: Patients with severe mast cell activation syndrome (MCAS)

  • Mechanism/Focus:: Masitinib is a tyrosine kinase inhibitor that targets mast cell activity directly, unlike antihistamines that only address downstream mediator release. MCAS is identified in an estimated 50% of ME/CFS patients by some specialists.

  • Primary Outcomes:: MCAS symptom severity; safety and tolerability

  • Estimated Completion:: Not yet announced

  • Timeline:: Trial active as of 2025–2026

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 7 (immune dysfunction—mast cells), Ch. 19 (integrative approaches)

Mast cell activation has emerged as a significant comorbidity in ME/CFS subsets, with some clinicians reporting MCAS in up to half of their ME/CFS patients. A 2026 cromolyn sodium case series from Dutch and Johns Hopkins investigators showed improvement in ME/CFS-related symptoms alongside MCAS management. Masitinib’s upstream mechanism (direct tyrosine kinase inhibition rather than antihistamine blockade) could provide more complete mast cell stabilisation. If effective, this trial could open a treatment pathway for the MCAS subset of ME/CFS patients who respond poorly to conventional antihistamine regimens.

10 Cornell NAC–Glutathione Brain Study

  • Principal Investigator:: Dikoma Shungu, PhD

  • Institution:: Weill Cornell Medical College, United States

  • Contact/URL:: https://clinicaltrials.gov/study/NCT04542161

  • Registry ID:: NCT04542161

  • Funder:: NINDS (National Institute of Neurological Disorders and Stroke)

  • Status:: Recruiting (Phase 2)

  • Phase:: Phase 2, double-blind, placebo-controlled, randomised

  • Cohort:: 60 participants (20 per arm: 0 mg / 900 mg / 3600 mg daily NAC), ages 21–60, baseline brain GSH at or below predefined cutoff, primary ME/CFS diagnosis

  • Mechanism/Focus:: Tests N-acetylcysteine (NAC) as a glutathione (GSH) precursor to restore cortical GSH reserves depleted by oxidative stress. Uses magnetic resonance spectroscopy (MRS) to measure brain GSH levels as a direct target engagement biomarker. Three-arm dose-response design.

  • Primary Outcomes:: Brain GSH levels (MRS); plasma oxidative stress markers

  • Estimated Completion:: \(\sim\) 2026

  • Timeline:: Recruitment ongoing

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 6 (energy metabolism—oxidative stress), Ch. 22 (mechanistic studies)

This trial is notable for using MRS as both a mechanistic measurement and treatment-response biomarker in a single tool. If NAC restores brain GSH levels and correlates with symptom improvement, it would establish oxidative stress as a druggable target in ME/CFS and validate a non-invasive brain biomarker for treatment monitoring. The three-arm dose-response design addresses the fundamental question of whether standard supplement doses (900 mg) achieve meaningful CNS penetration.

11 NSU Directed Probiotics for ME/CFS

  • Principal Investigator:: Nancy Klimas, MD

  • Institution:: Nova Southeastern University, Institute for Neuro-Immune Medicine, United States

  • Contact/URL:: https://clinicaltrials.gov/study/NCT06211062

  • Registry ID:: NCT06211062

  • Funder:: Institutional

  • Status:: Recruiting (Phase 2)

  • Phase:: Phase 2, randomised, placebo-controlled

  • Cohort:: 100 participants (25 per arm \(\\times\) 4 arms: ME/CFS with/without IBS \(\\times\) active/placebo), ages 45–70, Canadian Consensus Criteria

  • Mechanism/Focus:: Tests i3.1 probiotic (Floradapt Intensive GI) to reduce GI inflammation, normalise gut–brain axis, and reset microbiome. Four-arm design allows interaction analysis between IBS comorbidity and treatment response.

  • Primary Outcomes:: GI inflammation markers; IBS severity score; ME/CFS global function; assessed at 8 and 12 weeks

  • Estimated Completion:: \(\sim\) 2026

  • Timeline:: Recruitment ongoing

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 11 (gut microbiome—primary), Ch. 7 (immune dysfunction—gut–immune axis)

This is the first ME/CFS-specific probiotic RCT with IBS stratification. The Klimas group’s neuro-immune medicine expertise and the four-arm design (separating ME/CFS-only from ME/CFS+IBS) could determine whether gut-targeted interventions benefit all ME/CFS patients or specifically those with GI comorbidity—a distinction with direct clinical implications for the microbiome hypothesis discussed in Chapter 11.

12 ADDRESS-LC (Bezisterim for Long Covid Neurocognition)

  • Principal Investigator:: Multi-site (BioVie Inc.)

  • Institution:: Multi-centre, United States (DoD-funded)

  • Contact/URL:: https://clinicaltrials.gov/study/NCT06847191

  • Registry ID:: NCT06847191

  • Funder:: Department of Defense (US)

  • Status:: Recruiting (first patient enrolled May 2025)

  • Phase:: Phase 2, multi-centre, double-blind, RCT

  • Cohort:: 200 adults with Long Covid, enriched for cognitive impairment and fatigue, symptoms \(\geq\) 3 months

  • Mechanism/Focus:: Bezisterim (NE3107) is an orally bioavailable, blood–brain barrier-permeable insulin sensitiser and selective NF-\(\kappa\)B/ERK modulator. Blocks TNF-\(\alpha\) and neuroinflammation without global immunosuppression. Targets the neuroinflammation hypothesis for brain fog. Same drug being explored in Alzheimer’s and Parkinson’s.

  • Primary Outcomes:: Cogstate Cognition battery (cognitive performance); secondary: fatigue

  • Estimated Completion:: Data expected H1 2026

  • Timeline:: 84-day treatment period

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 7 (immune dysfunction—neuroinflammation), Ch. 22 (mechanistic studies—Long Covid overlap)

ADDRESS-LC is notable for targeting neuroinflammation via a mechanism distinct from LDN: selective NF-\(\kappa\)B modulation rather than glial cell modulation. The blood–brain barrier permeability and dual insulin-sensitising/anti-inflammatory action address two pathophysiological axes simultaneously. Cross-disease application (Alzheimer’s, Parkinson’s, Long Covid) could accelerate regulatory pathways and provide comparative data on shared neuroinflammatory mechanisms.

13 LC-REVITALIZE (Upadacitinib + Pirfenidone)

  • Principal Investigator:: Douglas Fraser, MD PhD

  • Institution:: Western University, London, Ontario, Canada; Schmidt Initiative for Long COVID (SILC); multi-national

  • Contact/URL:: https://clinicaltrials.gov/study/NCT06928272

  • Registry ID:: NCT06928272

  • Funder:: Schmidt Initiative for Long COVID (SILC)

  • Status:: Recruiting (Phase 3)

  • Phase:: Phase 3, double-blind, placebo-controlled, multi-arm platform

  • Cohort:: \(\sim\) 348 adults with Long Covid (prior confirmed SARS-CoV-2, symptoms \(\geq\) 3 months); sites in Brazil, Canada, Italy, Uganda, USA, Zambia

  • Mechanism/Focus:: Repurposed drug platform trial. Upadacitinib (JAK1 inhibitor, approved for rheumatoid arthritis) and pirfenidone (anti-fibrotic, approved for lung disease) identified via AI proteomics screen of 5,400 blood proteins from 1,028 participants.

  • Primary Outcomes:: Five symptom domains: fatigue, breathlessness, cognition, musculoskeletal pain, circulation

  • Estimated Completion:: \(\sim\) 2027

  • Timeline:: Recruitment ongoing across 6 countries

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 7 (immune dysfunction—JAK pathway), Ch. 13 (integrative models), Ch. 22 (mechanistic studies—Long Covid overlap)

LC-REVITALIZE is the first Long Covid treatment trial to use AI-driven proteomics for drug selection, screening 5,400 proteins to identify candidate interventions. The JAK1 inhibitor arm complements the RECOVER-TLC baricitinib trial (Section Large-Scale Federally Funded Programmes), testing a more selective JAK inhibitor. The multi-national platform design across six countries enables geographic and genetic diversity rarely achieved in ME/CFS-adjacent trials. If positive, the AI proteomics drug-selection methodology could be applied directly to ME/CFS cohorts.

14 Viral Persistence Trials (Paxlovid/STOP-PASC)

  • Principal Investigator:: Multiple (NIH-funded)

  • Institution:: Multi-site across the United States

  • Contact/URL:: https://clinicaltrials.gov/study/NCT05576662

  • Registry ID:: NCT05576662 (STOP-PASC); PAX LC (separate trial)

  • Funder:: NIH

  • Status:: Completed; results published 2025

  • Phase:: Phase 2, randomised, double-blind, placebo-controlled

  • Cohort:: Adults with established Long Covid (STOP-PASC and PAX LC trials)

  • Mechanism/Focus:: Nirmatrelvir/ritonavir (Paxlovid) for 15 days to test whether antiviral treatment targeting SARS-CoV-2 viral persistence improves Long Covid symptoms. Both STOP-PASC and PAX LC trials showed no therapeutic benefit, despite the viral persistence hypothesis.

  • Primary Outcomes:: No significant improvement in Long Covid symptoms vs placebo in either trial

  • Estimated Completion:: Completed

  • Timeline:: Results from STOP-PASC (systems immunology analysis) published December 2025; PAX LC results published in The Lancet Infectious Diseases (2025)

  • Publication Medium:: The Lancet Infectious Diseases; medRxiv (systems immunology analysis)

  • Document Relevance:: Ch. 7 (immune dysfunction), Ch. 14 Speculative Cross-Disease Connections (cross-disease), Ch. 24 (controversies)

The negative results from STOP-PASC and PAX LC are as informative as positive findings would have been. If SARS-CoV-2 viral persistence were the primary driver of Long Covid symptoms, a 15-day course of a potent antiviral should have produced measurable improvement. The failure to do so suggests either that viral persistence is not the dominant mechanism in established Long Covid, that the treatment duration or timing was insufficient, or that downstream consequences of initial infection (immune dysregulation, autoimmunity, microbiome disruption) persist independently of ongoing viral replication. This has direct implications for ME/CFS, where post-infectious mechanisms similarly outlast the triggering infection.

15 CHIIME (Chronic Infections and Inflammation in ME/CFS)

  • Principal Investigator:: UCSF / PolyBio Research Foundation network (LIINC collaborative); Dr. John Chia (Enterovirus Medical Research Center) as key partner

  • Institution:: University of California San Francisco, United States

  • Contact/URL:: https://clinicaltrials.gov/study/NCT07227441

  • Registry ID:: NCT07227441

  • Funder:: PolyBio Research Foundation

  • Status:: Recruiting (start date January 2026)

  • Phase:: Observational, prospective, longitudinal

  • Cohort:: ME/CFS patients with pre-2019 onset only (excludes Long Covid onset to avoid confounding)

  • Mechanism/Focus:: Investigates viral persistence (particularly enterovirus tissue persistence in gut, muscle, brain), T-cell neuroinflammation, and longitudinal biological signatures. Gut tissue collected from a subset via biopsy to search for enterovirus RNA/protein. Uses whole-body PET imaging and single-nuclei RNA sequencing.

  • Primary Outcomes:: Longitudinal biomarker trajectories; enterovirus persistence confirmation; neuroimmune phenotyping

  • Estimated Completion:: September 2030

  • Timeline:: Multi-year longitudinal follow-up

  • Publication Medium:: Not yet announced

  • Document Relevance:: Ch. 7 (immune dysfunction—viral persistence), Ch. 11 (gut microbiome), Ch. 13 (integrative models), Ch. 22 (mechanistic studies)

CHIIME represents a paradigm shift from serology-based viral persistence research to direct tissue-level detection. By collecting gut, muscle, and CNS-adjacent tissue, this study can directly test whether enterovirus RNA and protein persist in tissues of ME/CFS patients—moving beyond the indirect evidence that has characterised viral persistence research for decades. The pre-2019 onset criterion ensures that findings apply to classical ME/CFS rather than post-COVID presentations, addressing a critical gap in the field.